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Designing Computational Biology Workflows with Perl
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CC BY-NC-SA
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This manual guides the instructor to combine the partial files of the virtual machine image and construct sequencer.ova file. It is accompanied by the partial files of the virtual machine image.

Subject:
Applied Science
Computer Science
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Author:
Esma Yildirim
Date Added:
06/15/2019
Designing Computational Biology Workflows with Perl
Conditional Remix & Share Permitted
CC BY-NC-SA
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This material introduces Linux File System structures and demonstrates how to use commands to communicate with the operating system through a Terminal program. Basic program structures and system() function of Perl are discussed. A brief introduction to gene-sequencing terminology and file formats are given.

Subject:
Applied Science
Computer Science
Material Type:
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Author:
Esma Yildirim
Yildirim Esma
Date Added:
05/01/2019
"Designing Computational Biology Workflows with Perl Part 2
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CC BY-NC-SA
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This material briefly reintroduces the DNA double Helix structure, explains SNP and INDEL mutations in genes and describes FASTA, FASTQ, BAM and VCF file formats. It also explains the index creation, alignment, sorting, marking duplicates and variant calling steps of a simple preprocessing workflow and how to write a Perl script to automate the execution of these steps on a Virtual Machine Image.

Subject:
Applied Science
Computer Science
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Author:
Esma Yildirim
Date Added:
06/15/2019
Designing Computational Biology Workflows with Perl Part 2b
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CC BY-NC-SA
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This material introduces the AWS console interface, describes how to create an instance on AWS with the VMI provided and connect to that machine instance using the SSH protocol. Once connected, it requires the students to write a script to automate the tasks to create VCF files from two different sample genomes belonging to E.coli microorganisms by using the FASTA and FASTQ files in the input folder of the virtual machine. The same exercise can be applied if the VMI is installed on a local machine using virtualization software (e.g. Oracle VirtualBox). In this case, the Terminal program of the VMI can be used to do the exercise.

Subject:
Applied Science
Computer Science
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Author:
Esma Yildirim
Date Added:
06/15/2019
Elementary Ergonomics
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CC BY-NC-SA
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Elementary Ergonomics is an introduction to basic physical ergonomics theory and practice for students of other - than Industrial Design Engineering of Delft University of Technology - institutes for higher learning, such as Dutch universities, universities of EU and non-EU countries, and universities of applied sciences. The course consists of the following topics: anthropometry (1D, 2D, 3D including digital human modelling), biomechanics, and comfort.

Furthermore, the role of user involvement in the design process (evaluation of existing products and environments and of created concepts, models and prototypes) will be explained. Moreover, the meaning and representation of use cues in product design will be highlighted.

Subject:
Applied Science
Architecture and Design
Material Type:
Homework/Assignment
Lecture
Lecture Notes
Reading
Provider:
Delft University of Technology
Provider Set:
Delft University OpenCourseWare
Author:
ir M.C. Dekker
Date Added:
02/26/2016
English Composition I (ENGL 101)
Unrestricted Use
CC BY
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English 101 focuses on the analysis of basic human issues as presented in literature with an emphasis on analytic reading, writing and discussion, and on development of argumentative essays based on textual analysis, with attention to style, audience and documentation. By writing several analytical, thesis-driven essays which show engagement with and understanding of a variety of texts, students will practice the critical thinking, reading and writing skills which comprise an important component of college and university studies as well as clear, audience-appropriate communications in other professional settings.This class is comprised of a series of three units, each of which is centered around an essay assignment. For each unit, in addition to the essay itself, you‰ŰŞll be asked to respond to reading assignments and to complete exploratory writing assignments. You‰ŰŞll do a lot of reading and writing, and your instructor will ask you to respond to ideas from our texts, from specific assignments, and from each other. Login: guest_oclPassword: ocl

Subject:
Composition and Rhetoric
English Language Arts
Material Type:
Full Course
Homework/Assignment
Lecture Notes
Lesson Plan
Reading
Syllabus
Provider:
Washington State Board for Community & Technical Colleges
Provider Set:
Open Course Library
Date Added:
10/31/2011
Essential Mechanics - Statics and Strength of Materials with MATLAB and Octave
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CC BY
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Essential Mechanics - Statics and Strength of Materials with MATLAB and Octave
P. Venkataraman

Essential Mechanics - Statics and Strength of Materials with MATLAB and Octave combines two core engineering science courses - “Statics” and “Strength of Materials” - in mechanical, civil, and aerospace engineering. It weaves together various essential topics from Statics and Strength of Materials to allow discussing structural design from the very beginning. The traditional content of these courses are reordered to make it convenient to cover rigid body equilibrium and extend it to deformable body mechanics.The e-book covers the most useful topics from both courses with computational support through MATLAB/Octave. The traditional approach for engineering content is emphasized and is rigorously supported through graphics and analysis. Prior knowledge of MATLAB is not necessary. Instructions for its use in context is provided and explained. It takes advantage of the numerical, symbolic, and graphical capability of MATLAB for effective problem solving. This computational ability provides a natural procedure for What if? exploration that is important for design. The book also emphasizes graphics to understand, learn, and explore design. The idea for this book, the organization, and the flow of content is original and new. The integration of computation, and the marriage of analytical and computational skills is a new valuable experience provided by this e-book. Most importantly the book is very interactive with respect to the code as it appears along with the analysis.

Subject:
Applied Science
Architecture and Design
Engineering
Material Type:
Full Course
Interactive
Lecture Notes
Simulation
Textbook
Provider:
Rochester Institute of Technology
Author:
P Venkataraman
Date Added:
01/14/2020
Ethics and Public Policy
Unrestricted Use
CC BY
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This course will provide the student with an overview of the role that ethical, cultural, religious, and moral principles play in public policy. The course will introduce the student to common themes found in the foundational theories of ethics and morality in politics such as justice, equality, fairness, individual liberty, free enterprise, charity, fundamental human rights, and minimizing harm to others. These themes are integrated into various decision-making models that you will learn about. Students will examine five types of decision frameworks used to make and implement public policy, as well as rationales used to justify inequitable impact and outcomes of policies. Upon successful completion of this course, students will be able to: explain how personal morality and ethics impact the policymaking process; discuss various ethical frameworks used to resolve policy dilemmas; identify statutes, ethical codes, and legal opinions that define the normative parameters of key domestic and international policy issues; assess the impact that public interest groups have on policymaking and execution of policies. (Political Science 401)

Subject:
Arts and Humanities
Philosophy
Material Type:
Assessment
Full Course
Lecture
Lecture Notes
Reading
Syllabus
Provider:
The Saylor Foundation
Date Added:
06/14/2019
Evolving Design
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CC BY-NC-SA
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Ontwerpen is een combinatie van logisch redeneren en het creatief combineren van bestaande technieken om tot nieuwe, innovatieve ideeen te komen. Een goede werktuigkundig ontwerper put zijn creativiteit uit kennis van een groot aantal bestaande werktuigbouwkundige systemen. Hoe groter die kennis, hoe groter de kans dat nieuwe, innovatieve ontwerpconcepten ontstaan. Vooral kennis over niet-conventionele techniek bevordert dit creatieve ontwerpproces.

Het doel van het vak Evolving Design is om studenten de onderhavige werkprincipes te tonen van een grote hoeveelheid niet-conventionele werktuigbouwkundige systemen. Er wordt hierbij zowel gekeken naar bijzondere ontdekkingen uit het verleden als uit het heden, met een blik op de toekomst. De ontwerpprincipes worden niet simpelweg opgesomd, maar geplaatst in hun fascinerende, historische ontwikkeling om te laten zien hoe de ontwerpers hun creativiteit en vernuft gebruik(t)en om goedwerkende oplossingen te vinden binnen de beperkingen van de beschikbare fabricageprocessen en beschermingsmogelijkheden (patenten). Veel oplossingen uit het verleden zijn klaar om te worden toegepast in de technologie van de toekomst!

Het vak richt zich primair op het kwalitatief beschrijven van de werkprincipes van bestaande technologieen, met de nadruk op bewegende mechanische constructies. Hoewel het kwantatief, in detail uitwerken van de kracht-bewegingsvergelijkingen niet het hoofddoel van het vak is, zijn mechanische vergelijkingen wel essentieel als zij leiden tot een beter begrip.

Subject:
Applied Science
Architecture and Design
Material Type:
Activity/Lab
Assessment
Lecture Notes
Provider:
Delft University of Technology
Provider Set:
Delft University OpenCourseWare
Author:
Dr. ir. P. (Paul) Breedveld
Date Added:
02/16/2016
A First Course in Linear Algebra
Unrestricted Use
CC BY
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This text, originally by K. Kuttler, has been redesigned by the Lyryx editorial team as a first course in linear algebra for science and engineering students who have an understanding of basic algebra.
All major topics of linear algebra are available in detail, as well as proofs of important theorems. In addition, connections to topics covered in advanced courses are introduced. The text is designed in a modular fashion to maximize flexibility and facilitate adaptation to a given course outline and student profile.
Each chapter begins with a list of student learning outcomes, and examples and diagrams are given throughout the text to reinforce ideas and provide guidance on how to approach various problems. Suggested exercises are included at the end of each section, with selected answers at the end of the text.
Lyryx develops and supports open texts, with editorial services to adapt the text for each particular course. In addition, Lyryx provides content-specific formative online assessment, a wide variety of supplements, and in-house support available 7 days/week for both students and instructors.

Subject:
Mathematics
Material Type:
Homework/Assignment
Lecture Notes
Textbook
Provider:
Lyryx Learning
Author:
Adapted by Lyryx Learning
K. Kuttler
Date Added:
02/12/2015
GORGON TESSELLATION ------->  BRENIKOU TESSELLATIONs
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CC BY-NC-ND
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LINEAR TRANSFORMATIONs ON THE PLAIN .
INTRODUCTION TO ISOHEDRALS , BASIC BLOCKS TO SYMMETRIC TILING.
TESSELLATIONs (PERIODIC & APERIODIC)
.
BRENIKOU , MACEDONIA EAST , HELLAS (GREECE).ARTIST (PAINTER & SCULPTOR) : EFSTRATOPOULOS NIKOLAOS ( efstrato71@gmail.com )MUSIC : Εύελδωρ - Λυρογηθής (ANCIEN...

Subject:
Applied Science
Architecture and Design
Arts and Humanities
Computer Science
Geometry
Graphic Arts
Mathematics
Material Type:
Assessment
Homework/Assignment
Lecture Notes
Author:
GEORGAKAS NIKOLAOS (BRENIKOU)
Date Added:
10/26/2021
General Chemistry with Labs (CHEM 161)
Unrestricted Use
CC BY
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A three-quarter general chemistry sequence primarily for science, pre-professional, and engineering students. The CHEM& 161/162/163 series introduces the basic concepts of chemistry: atomic structure and bonding, periodicity, physical measurement, quantitative relationships, chemical reactivity, oxidation and reduction, stoichiometry, ideal gas laws, aqueous solutions, colligative properties, intermolecular forces, structure of matter, equilibrium, acid/base topics, kinetics, thermodynamics, electrochemistry, nuclear chemistry, qualitative analysis, d-block metals and coordination chemistry, and an introduction to organic chemistry.Login: guest_oclPassword: ocl

Subject:
Chemistry
Physical Science
Material Type:
Activity/Lab
Full Course
Homework/Assignment
Lecture Notes
Lesson Plan
Reading
Syllabus
Provider:
Washington State Board for Community & Technical Colleges
Provider Set:
Open Course Library
Date Added:
10/31/2011
Global Inequality Lab 1
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CC BY-NC-ND
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These materials include background for the instructor and a lab that engages student in an analysis of global inequality while learning and using the R language (a programming language for statistics). Students obtain data on the US and two other countries (one more developed and one less developed).

Subject:
Applied Science
Computer Science
Social Science
Sociology
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Lehman College
Author:
Elin Waring
Janet Michello
Date Added:
05/31/2019
Global Inequality Lab 2
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CC BY-NC-ND
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These materials include background for the instructor and a lab that engages student in an analysis of global inequality while learning and using the R language (a programming language for statistics). Students ultimately write a function to access country level data from the CIA World Factbook.

Subject:
Applied Science
Computer Science
Social Science
Sociology
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Lehman College
Author:
Elin Waring
Janet Michello
Michello Janet
Waring Elin
Date Added:
05/31/2019
Human Growth and Development: Lecture Slides
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CC BY-SA
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This set of lecture slides was created under a Round Four ALG Textbook Transformation Grant with an accompanying question library for tests and quizzes. The course uses the free and open Human Development sections of Boundless Psychology. Topics covered include:
Nature vs. Nurture
Piaget
Attachment
Freud
Erikson
Kohlberg
Childhood Development
Adolescent Development
Adulthood Development
Late Adulthood

Subject:
Psychology
Social Science
Material Type:
Lecture Notes
Provider:
University System of Georgia
Provider Set:
Galileo Open Learning Materials
Author:
Ellen Cotter
Gary Fisk
Judy Orton Grissett
Date Added:
06/15/2019
Instructor’s Guide to Concepts of Biology
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CC BY-NC-SA
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This Instructor’s Guide contains the brief outlines of Chapters 12-21 as found in Concepts of Biology, though some underwent revision. Also, instructors will find detailed outlines of the text for use in lecturing, as well as structured outlines that may be used by students to take notes while reading the chapter or during lecture. All outlines are derived from the OpenStax text. Additionally, study guides that contain a variety of questions are provided for students.

Subject:
Biology
Life Science
Material Type:
Lecture Notes
Student Guide
Teaching/Learning Strategy
Provider:
University System of Georgia
Provider Set:
Galileo Open Learning Materials
Author:
Molly Smith
Date Added:
04/26/2016
Intermediate Algebra (MATH 9Y)
Unrestricted Use
CC BY
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Students will learn to solve compound inequalities, absolute value inequalities, and systems of equations, simplify radical expressions, solve quadratic equations and applications and simplify compound fractions, solve rational equations and applications, use function notation to solve problems and use exponential and logarithmic functions.Login: guest_oclPassword: ocl

Subject:
Algebra
Mathematics
Material Type:
Full Course
Homework/Assignment
Lecture Notes
Lesson Plan
Syllabus
Provider:
Washington State Board for Community & Technical Colleges
Provider Set:
Open Course Library
Date Added:
10/31/2011
Introduction to Careers in Child Development
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CC BY-NC-SA
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This book provides free educational resources to be used in the area of career exploration within the field of child development and early childhood care and education. Resources and information relates to Child Development /Early Childhood Education and Education majors at California Community Colleges.

Subject:
Career and Technical Education
Early Childhood Development
Education
Material Type:
Full Course
Homework/Assignment
Lecture Notes
Reading
Textbook
Author:
Gloria San Jose Daims M.S.
Date Added:
06/28/2023